The Inventor
This puzzle begins with a letter from Nikola Tesla, before giving you two 'find the Apple' pictures. Unlike previous puzzles, you won't be able to home in on the sonar.
Subject 16 reveals that Tesla found the Fourth Apple in Croatia, but the Templars found the Apple in Tesla's lab and used it to drive Tesla mad.
For the final image, move your cursor over each of the light globes to activate them.
Titans of Industry
The first puzzle is a Caeser wheel: the key is hidden in the schematics that is also shown on the page, 4=1. The password is thus 240.
For the next map, move your cursor over each of the light globes to deactivate them.
The next puzzle is a 'spot the Apple' picture, showing Mark Twain in Tesla's lab. The Apple is in Twain's hands; there is also a hidden Morse cipher reading "They used it to make Tesla go insane. The organization took his research. Alien Property Custodian Office".
You are then shown a letter from Thomas Edison to a Mr Morgan, both Templars, advising that Tesla intends to use the Fourth Apple to provide free electricity and information networks, which the Templars oppose. Edison thus urges Morgan to cut Tesla's funding.
Now you have a second Caeser wheel to solve: but some of the symbols used on the wheel are obscured. The symbol pattern is fairly simple: dashes represent multiple dots, which represent a tally. The key to the Caeser wheel is split amongst two images: the Model T car (2) and the cover of the newspaper. The code to enter is thus:
The next letter is from Henry Ford to Edison. Edison apparently gave (or at least authorized the use of) the Fourth Apple by Ford, allowing Ford to keep his workers on lower wages. Ford was eventually instructed to give the Apple to "H", who will "take over" and begin a war that will allow a new Templar order to arise from the chaos. The letter also reveals the Templars know H is intending to "purge" Europe and that Ford, at least, supports this idea. The letter also implies Firestone is also a Templar.
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Solution to the first Caeser wheel.
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The image map.
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Solution to the Mark Twain image.
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Solution to the second Caeser wheel.
I Am Become Death, The Destroyer of Worlds
The first phase of the puzzle is another partially-obscured Caeser wheel. The two pictures on the left each have the key: one has the number 9 while the other has a triangle rafter highlighted. When you align the wheel, you'll see how the symbols go from triangles to squares and circles. The solution is thus:
You are then shown an Abstergo memo instructing a Templar to give "O" the authorisation to proceed with a real-world verification of his experiments.
The next screen presents you with a big red button. There are no hidden texts here, so move your cursor over the button and fire, revealing a video clip of an atomic explosion.
The final screen presents a 'sonar location' puzzle. Listen to the sounds of the Geiger counter to home in on the access code that completes the puzzle.
Bloodlines
Subject 16 is starting to deteriorate. He has visions of holding a rifle at Gettysburg; stabbing a man and getting blood on his waistcoat; of an opera soprano who cries as they copulate; and of speaking at the Forum but no-one listens.
The only puzzle involves selecting the paintings with the common theme. The theme is the union of gods and mortals, and the paintings are: Danaë Visited by Zeus, Jupiter and Io, Leda and the Swan, Cupid and Psyche, and the Rape of Europa.
Subject 16 then reveals the Assassins' abilities are the result of interbreeding between humans and Those Who Came Before.
Guardians
The first puzzle is a picture ring (of Ivan the Terrible holding his dead son). Twist Ring Three 2 times to the right; twist Ring One 4 times to the right; twist Ring Four 5 times to the right; twist Ring One 5 times to the left; twist Ring Two 5 times to the left; then twist Ring Five 5 times to the right.
The next part is a map of targets murdered by the Assassins. Move your cursor over each one to complete the puzzle.
The Cavalry
The puzzle begins with a letter sent to Nikola Tesla from the Assassins, warning of the Templar's plan for Tunguska. A map is then presented with various place names, but only one name marks the correct spot: Tunguska. If your cursor hits any place names other than Tunguska, the names will shuffle again. Move your cursor over the Tunguska text and then a portrait of Nikola Tesla and a picture of The Staff appears; drag the Staff to Tesla to complete the puzzle.
An anonymous memo appears from 1908: the Templars had taken The Staff to Tunguska to conduct experiments on it, but the Assassins recruited Tesla to destroy the artifact. The Assassins knew Tesla's career had been destroyed by the Templars, and so Tesla agreed. The Staff was destroyed before the Templars could take advantage of it.
The Bunker
The Caeser wheel in this puzzle doesn't simply obscure two portions: the order of the symbols in the code box is random and there are some fake symbols to choose from as well. If you look at the symbols in the wheel and count the number of sharp vertices, you'll be able to discern the pattern. On the image with the tank, the < symbol is shown; place that symbol at the top of the wheel to align it correctly. The solution to the wheel is thus:
An Abstergo memo shows that the war has mostly gone to plan by ushering in a new order, but "H" was supposed to meet "C" with the Piece of Eden and didn't make the expected rendezvous on 30 April 1945.
Subject 16 explains that although the Templars ushered in their new order, the Assassins were able to kill Hitler.
The final part of the puzzle involves locating the Assassin emblem in a picture of the Führerbunker. Look in the upper-right corner, over the bunker entrance.
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The Caeser wheel.
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The bunker image.
Synapses
The first phase of the puzzle is a Caeser wheel. The key to the cipher is amongst the black & white brain images, but two necessary symbols are obscured from the wheel. As Shaun explains, the 'trees' are 'ones' and the 'mountains' are 'tens': the values of the wheel are still in order, so you can use that to determine which symbols to select from. The correct key is thus:
You are then presented with an article from the inaugural issue of Biological Frontier from January 2012. This article, by Doctors Yijie Wu and PJ Traunero, describes a unique neurotransmitter that appears exclusively in humans and yet does not react to any sort of stimulation.
The second part of the puzzle involves moving the cursor over the various synapses within the picture. Look amongst the nerve lines for two circular parts.
Subject 16 reveals the neurotransmitter described by Wu & Traunero reacts in the presence of a Piece of Eden.
The Fourth Day
Subject 16 advises "It happened once before. The Pieces were once part of a whole." Your first puzzle is a 'common theme' picture set: select the five pictures depicting the sun: Nazca Textile c. 200; Aztec Calendar Stone 1427; The Eastern Gate 1816; Book of the Dead c. 1310 BCE.; Sistine Chapel Ceiling Fresco 1512.
Finally you need to locate the Earth within the picture of the Sun. It's located just below and left of the centre. There are also four unencrypted messages in the picture, indicating that "fire from the heavens" caused terrible loss of life.
The Origin of the Species
The first puzzle is a picture ring: twist Ring Five 10 times to the right; twist Ring Four 2 times to the left; twist Ring Three 2 times to the right; twist Ring Two 5 times to the right; and then twist Ring One 3 times to the left.
Next is a picture location puzzle. There are no hidden messages in the picture. Below the eyes at the top of the picture is an image of Vitruvian Man, which is your target.
You will now come to a Caeser wheel that has no values on it whatsoever. The clue is in the Assassin's creed that is displayed: everything is permitted. Submit any combination of symbols to proceed.
You are shown an Abstergo memo from 3 January 1997, instructing that faked fossil evidence must be planted for Tim White to find so the world continues to believe human evolution did not have any assistance.
For the final part of the puzzle, move your Apple cursor over each of the bones in the homonid skeleton. This transmutes the skeleton into a Homo sapiens skeleton.